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  • About
  • Current scheme
  • Method
  1. Technical Descriptions of Analysis Tools
  2. Virulence

BIGSdb schemes

Pathogenwatch supports integrating virulence schemes from BigsDB

PreviousVirulenceFinderNextWHO bacterial priority pathogens

Last updated 1 month ago

About

The Pathogenwatch MLST/cgMLST software is able to integrate any scheme provided by hosts using the BIGSdb software, such as PubMLST or the Pasteur Institute. These schemes are run in an identical manner to produce a profile of allele codes corresponding to the set of queried genes.

Current scheme

Species
Host
Link

Listeria monocytogenes

Pasteur Institute

Method

Please see the MLST software page for a complete description of how it works.

https://bigsdb.pasteur.fr/api/db/pubmlst_listeria_seqdef/schemes/5