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next.pathogen.watch docs
  • Welcome to Pathogenwatch
  • ๐Ÿ“ขNews & Release Notes
  • โ–ถ๏ธGetting Started
  • ๐Ÿ“–How to use Pathogenwatch
  • ๐Ÿ“šTechnical Descriptions of Analysis Tools
    • Genome Assembly
    • Assigning species with Speciator
    • Lineage Assignment & Genotyping Methods
      • Genotyphi
      • Kleborate
      • cgMLST
      • Klebsiella LIN Codes
      • MLST
      • NG-MAST
      • Pangolin
      • PopPUNK
      • Vista
      • HierCC
      • SARS-CoV-2 Notable Mutations
    • Antimicrobial Resistance Prediction
    • Trees, Clustering, and Context Search
    • Serotyping
    • Virulence
    • Plasmid Annotation
    • Change log
  • ๐ŸšจWHO bacterial priority pathogens
  • ๐Ÿ“ฃHow to cite
  • ๐Ÿ™Acknowledgements
  • โš ๏ธPrivacy and Terms Of Service
  • โ“FAQ
  • โ—Report an Issue
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  1. ๐Ÿ“šTechnical Descriptions of Analysis Tools

Lineage Assignment & Genotyping Methods

Genotyphichevron-rightKleboratechevron-rightcgMLSTchevron-rightKlebsiella LIN Codeschevron-rightMLSTchevron-rightNG-MASTchevron-rightPangolinchevron-rightPopPUNKchevron-rightVistachevron-rightHierCCchevron-rightSARS-CoV-2 Notable Mutationschevron-right
PreviousAssigning species with Speciatorchevron-leftNextGenotyphichevron-right

Last updated 23 days ago