next.pathogen.watch docs
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  • Welcome to Pathogenwatch
  • News & Release Notes
  • Getting Started
  • How to use Pathogenwatch
  • Technical Descriptions of Analysis Tools
    • Genome Assembly
    • Plasmid Annotation
    • Assigning species with Speciator
    • Trees, Clustering, and Context Search
    • Lineage Assignment & Genotyping Methods
      • Genotyphi
      • Kleborate
      • cgMLST
      • Klebsiella LIN Codes
      • MLST
      • NG-MAST
      • Pangolin
      • PopPUNK
      • Vista
      • Finding HierCC codes with hclink
      • SARS-CoV-2 Notable Mutations
    • Serotyping
    • Antimicrobial Resistance Prediction
    • Virulence
    • Change log
  • WHO bacterial priority pathogens
  • Initiatives powered by Pathogenwatch
  • How to cite
  • Acknowledgements
  • Privacy and Terms Of Service
  • FAQ
  • Report an Issue
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  1. Technical Descriptions of Analysis Tools

Lineage Assignment & Genotyping Methods

GenotyphiKleboratecgMLSTKlebsiella LIN CodesMLSTNG-MASTPangolinPopPUNKVistaFinding HierCC codes with hclinkSARS-CoV-2 Notable Mutations
PreviouscgMLST TreeNextGenotyphi

Last updated 11 months ago