Welcome to Pathogenwatch

Pathogenwatch provides a platform for comparing pathogen genomes from around the world, integrating diverse data sets with rich representations.

Pathogenwatch is a user-friendly web platform empowering researchers and public health professionals to analyse and visualise genomic data from microbial pathogens.

Designed to streamline pathogen surveillance, it integrates advanced tools for resistance gene detection, lineage identification, and outbreak tracking, with interactive visualisations and access to global databases.

Cutting-edge genomic analysis combined with seamless data sharing, Pathogenwatch enables faster, more informed decision-making to combat antimicrobial resistance and monitor the spread of infectious diseases worldwide.

To get started, sign in and then take a "Brief Tour of Pathogenwatch". Learn even more in the "How to use Pathogenwatch" pages.

Upload

Upload microbial genomes to initiate a suite of automated analyses

• Tools include:

  • Species assignment using "Speciator".

  • Over 20 core genome MLST schemes.

  • Typing with classic MLST, Genotyphi, NG-MAST, PopPUNK and others.

  • Antibiotic resistance prediction.

Your submitted genome data is kept private unless you select sharing.

Genome Uploads & Folders

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Investigate

For latest news and notices of upcoming maintenance or other PW related events visit the Announcements page.

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Pathogenwatch is provided by the Centre for Genomic Pathogen Surveillance