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next.pathogen.watch docs
  • Welcome to Pathogenwatch
  • ๐Ÿ“ขNews & Release Notes
  • โ–ถ๏ธGetting Started
  • ๐Ÿ“–How to use Pathogenwatch
  • ๐Ÿ“šTechnical Descriptions of Analysis Tools
    • Genome Assembly
    • Assigning species with Speciator
    • Lineage Assignment & Genotyping Methods
    • Antimicrobial Resistance Prediction
    • Trees, Clustering, and Context Search
      • Core Genome Tree
      • cgMLST Clustering & Context Searching
      • SARS-CoV-2 Genome Tree
      • cgMLST Tree
    • Serotyping
    • Virulence
    • Plasmid Annotation
    • Change log
  • ๐ŸšจWHO bacterial priority pathogens
  • ๐Ÿ“ฃHow to cite
  • ๐Ÿ™Acknowledgements
  • โš ๏ธPrivacy and Terms Of Service
  • โ“FAQ
  • โ—Report an Issue
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  1. ๐Ÿ“šTechnical Descriptions of Analysis Tools

Trees, Clustering, and Context Search

Core Genome Treechevron-rightcgMLST Clustering & Context Searchingchevron-rightSARS-CoV-2 Genome Treechevron-rightcgMLST Treechevron-right
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