next.pathogen.watch docs
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  • Welcome to Pathogenwatch
  • News & Release Notes
  • Getting Started
  • How to use Pathogenwatch
  • Technical Descriptions of Analysis Tools
    • Genome Assembly
    • Plasmid Annotation
    • Assigning species with Speciator
    • Trees, Clustering, and Context Search
      • Core Genome Tree
        • About SNP-based trees
        • Core Assignment
        • Core Filter
        • Reference Assignment
        • Tree Construction
      • cgMLST Clustering & Context Searching
      • SARS-CoV-2 Genome Tree
      • cgMLST Tree
    • Lineage Assignment & Genotyping Methods
    • Serotyping
    • Antimicrobial Resistance Prediction
    • Virulence
  • WHO bacterial priority pathogens
  • Initiatives powered by Pathogenwatch
  • How to cite
  • Acknowledgements
  • Privacy and Terms Of Service
  • FAQ
  • Report an Issue
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  1. Technical Descriptions of Analysis Tools
  2. Trees, Clustering, and Context Search

Core Genome Tree

About SNP-based treesCore AssignmentCore FilterReference AssignmentTree Construction
PreviousTrees, Clustering, and Context SearchNextAbout SNP-based trees

Last updated 9 months ago