Change log

alignment-2697049-1

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amrfinder-1280-4

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amrfinder-1313-2

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amrfinder-1352-2

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amrfinder-194-2

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amrfinder-287-3

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amrfinder-354276-2

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amrfinder-470-3

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amrfinder-485-3

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amrfinder-562-2

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amrfinder-573-2

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amrfinder-590-2

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amrfinder-620-2

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amrfinder-727-2

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assembly-1

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cgmlst-1280-2

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cgmlst-1313-1

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cgmlst-1352-1

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cgmlst-1639-1

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cgmlst-1773-1

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cgmlst-195-1

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cgmlst-197-1

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cgmlst-287-1

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cgmlst-28901-3

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cgmlst-470-1

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cgmlst-485-1

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cgmlst-562-1

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cgmlst-573-2

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cgmlst-666-1

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cgmlst-727-1

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clermontyping-562-1

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clustering-cgmlst-3

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core-1280-1

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core-1336-1

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core-1463165-1

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core-1646-1

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core-244366-1

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core-28901-1

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core-485-1

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core-498019-1

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core-573-1

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core-64320-1

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core-666-1

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core-90370-1

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ectyper-562-1

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genotyphi-90370-1

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hclink-562-3

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hclink-562-4

Release date: 2025-12-01

Docker image: hclink:4.0.1-ecoli-2025_11_27.

Switched to using exact search mode in unum-usearch due to a small percentage of genomes not being assigned the nearest profile by heueristic mode searches.

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hclink-28901-3

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hclink-28901-4

Release date: 2025-12-01

Docker image: hclink:4.0.1-senterica-2025_11_27.

Switched to using same method as E. coli.

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kaptive-470-1

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kaptive-3390273-2

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kleborate-548-3

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kleborate-571-3

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kleborate-3390273-3

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lincodes-3390273-1

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metrics-2

Release date: 2025-06-12

Assembly stats are now produced by QUAST v5.3.0 (provided by staphb/quast:5.3.0).

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mlst-1280-3

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mlst-1313-2

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mlst-1336-2

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mlst-1352-3

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mlst-1639-2

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mlst-195-3

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mlst-197-3

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mlst-287-3

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mlst-28901-4

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mlst-3390273-2

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mlst-354276-3

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mlst-470-2

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mlst-485-2

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mlst-562-3

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mlst-571-2

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mlst-666-2

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mlst-727-3

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mlst-virulence-1639-1

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mlst2-470-2

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mlst2-562-1

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ngmast-1

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ngono-markers-1

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ngstar-1

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paarsnp-1280-1

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paarsnp-1313-1

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paarsnp-1352-1

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paarsnp-1773-1

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paarsnp-195-1

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paarsnp-197-1

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paarsnp-485-1

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paarsnp-498019-1

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paarsnp-666-1

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paarsnp-727-1

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paarsnp-90370-1

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pangolin-1

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plasmidfinder-ebacter-1

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plasmidfinder-gp-1

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poppunk-1313-2

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poppunk-666-1

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rfplus-1639-1

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rfplus-28901-1

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rfplus-562-1

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sarscov2-variants-1

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serotype-seqsero2-1

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serotype-seroba-2

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serotype-sistr-590-2

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speciator-1

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spn-pbp-amr-1313-1

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stecfinder-1

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tree-cgmlst-1639-1

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tree-cgmlst-562-1

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tree-core-1280-1

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tree-core-1336-1

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tree-core-1463165-1

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tree-core-1646-1

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tree-core-244366-1

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tree-core-28901-1

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tree-core-485-1

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tree-core-498019-1

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tree-core-573-1

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tree-core-64320-1

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tree-core-666-1

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tree-core-90370-1

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virulencefinder-562-1

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vista-1