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  • Technical Descriptions of Analysis Tools
    • Genome Assembly
      • Short Read Assembly
      • Assembling genomes with EToKi
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      • Inctyper
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        • About SNP-based trees
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      • Two-tool Serotyping with SISTR & SeqSero2
      • S. enterica SNP tree
      • PATH-SAFE analyses
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Technical Descriptions of Analysis Tools

PreviousTips and TricksNextGenome Assembly

Last updated 3 months ago

Genome Assembly
Plasmid Annotation
Assigning species with Speciator
Trees, Clustering, and Context Search
Lineage Assignment & Genotyping Methods
Serotyping
Antimicrobial Resistance Prediction
Virulence