The Map Panel
About The Map Panel
The Map panel uses Mapbox to create the basic map, and plots the locations of all genomes that have been provided with latitude and longitude coordinates in the metadata. No data gets sent to Mapbox; rather, your data are overlaid onto data from Mapbox within your local browser.
Using The Map Panel
Location markers are coloured according to the Colour Column.
When multiple genomes have the same location, the marker will be shown as a pie chart.
Selecting a map marker (or a group of markers, by drawing a line around them using the polygon lasso tool
) will highlight the respective leaves on the tree and filter the rows in the tables below.Applying the Viewport filter
and adjusting the zoom will automatically highlight and filter other panels based on what's currently visible in the map panel.Genomes selected in the Tree Panel or Data Tables will be highlighted on the map with a purple ring.
When an AMR column is selected, the map marker will be coloured in ratio of resistance/intermediate/sensitive phenotype (red/yellow/white) or present/absent (red/white) genotype. The circle in the top left shows the overall ratios for the selected resistance phenotype or genotype.
Other controls:
adjust marker sizes and opacity after clicking the map controls button
zoom in or out (swipe gestures work if using a touchpad)
move the map around
apply a different map style (e.g. satellite, topographic, etc.) using the Style lozenge
download an image by right-clicking on the map
Last updated