The Interactive Collection View

The Interactive Collection View's URL is permanent, even if the owner changes the title text. You can bookmark it and return later. If you are signed in and create a Collection, it will be saved to your account.

The "Interactive Collection View" consists of several interrelated components, along with a header row containing links to the home page and a "Downloads" button in the top right.

The Interactive Collection View for a collection, showing the Typing results data table and the colour legend.

The Tree Panel - A mutation distance based tree or network showing the relationships between the selected genomes, visualised using PhyloCanvas.

The Map Panel - A global map showing the locations of genomes that have geospatial metadata.

Data Tables - Tables displaying all uploaded metadata (user-supplied data), calculated typing assignments (such as MLST and Genotyphi) and antimicrobial resistance predictions.

Timeline - A timeline bar chart of all user-supplied sample dates for the genomes in the collection.

Search-and-filter query bar - a type-in field allowing the selection or finding of genomes by searching the metadata fields.

Clicking on the genome name in a table brings up the detailed genome report.

Users with some initiatives have additional features:

Context Search Panel - a cgMLST-based method of finding similar genomes to those in your Collection