next.pathogen.watch docs
  • Welcome to Pathogenwatch
  • News & Release Notes
    • Announcements
    • Release Notes 2025
    • Release Notes 2024
    • Release Notes 2023
    • Release Notes 2022
    • Release Notes 2019-2021
  • Getting Started
    • Sign in
    • A Brief Tour of Pathogenwatch
    • Interactive Collection View tutorial
    • Useful Links
  • How to use Pathogenwatch
    • Using the documentation
    • Using The Interactive Collection View
      • The Interactive Collection View
      • The Map Panel
      • The Tree Panel
        • Tree Panel
        • Generating a new tree
      • Data Tables
      • The Timeline Panel
      • Context search panel
      • Legend, Labels, and Colours
      • Searching genomes in a collection
      • Creating sub-collections
    • Genome Uploads & Folders
    • Browsing & Searching Genomes
    • Browsing Collections
    • Creating & Sharing Collections
    • Genome Reports
    • Deleting items
    • SARS-CoV-2 Tutorial
    • Tips and Tricks
  • Technical Descriptions of Analysis Tools
    • Genome Assembly
      • Short Read Assembly
      • Assembling genomes with EToKi
    • Plasmid Annotation
      • Inctyper
    • Assigning species with Speciator
    • Trees, Clustering, and Context Search
      • Core Genome Tree
        • About SNP-based trees
        • Core Assignment
        • Core Filter
        • Reference Assignment
        • Tree Construction
      • cgMLST Clustering & Context Searching
      • SARS-CoV-2 Genome Tree
      • cgMLST Tree
    • Lineage Assignment & Genotyping Methods
      • Genotyphi
      • Kleborate
      • cgMLST
      • Klebsiella LIN Codes
      • MLST
      • NG-MAST
      • Pangolin
      • PopPUNK
      • Vista
      • Finding HierCC codes with hclink
      • SARS-CoV-2 Notable Mutations
    • Serotyping
      • Kaptive
      • SeroBA
      • SISTR
      • ECTyper
    • Antimicrobial Resistance Prediction
      • Pathogenwatch AMR
      • Kleborate AMR
      • SPN-PBP-AMR
      • Resfinder
    • Virulence
      • STECFinder
      • VirulenceFinder
      • BIGSdb schemes
  • WHO bacterial priority pathogens
  • Initiatives powered by Pathogenwatch
    • PATH-SAFE
      • PATH-SAFE Sign in
      • What is the PATH-SAFE Programme?
      • PATH-SAFE powered by Pathogenwatch
      • Two-tool Serotyping with SISTR & SeqSero2
      • S. enterica SNP tree
      • PATH-SAFE analyses
  • How to cite
  • Acknowledgements
  • Privacy and Terms Of Service
  • FAQ
  • Report an Issue
Powered by GitBook
On this page
  1. How to use Pathogenwatch

Tips and Tricks

Please contact us if you have Tips & Tricks to add to this page

PreviousSARS-CoV-2 TutorialNextTechnical Descriptions of Analysis Tools

Last updated 3 months ago

The Colour Column can be set by clicking on the table header of the desired column in any of the Data Tables.

To understand more about the distribution of genomes represented by these pie chart markers, select one or more markers and open the “Selection” sidebar panel. Then change the Summary column to see different column distributions of those selected genomes.

The upper-right menu bar (banner menu) is accessible except on the Interactive Collection View. The hamburger menu icon is always available, regardless of what page you're on.